Function reference • SMILE

All functions

b_season(): Estimating the number of infections caused by 1 LIZ under seasonality and no dispersion effort

calc_local_R0(): Calculating local R0

lambda_t(): Calculate infection probability for time t

LIZ_negll(): LIZ negative log likelihood

rho_n(): Calculate average reproduction rate at time t

smile_main(): SMILE main function

SMILE_param_estim(): Parameter estimation from data